Technical specifications of the High Performance Computing (HPC) environment on Wingedhelix
Software
Key ingredients of the High Performance Computing (HPC) environment of the Wingedhelix cluster
- Linux OS: Rocky version 9.4 with Pulp for package distribution/management
- Job scheduling: Slurm Workload Manager 23.02.7
- Module system: Lmod
- Deployment of (Bioinformatics) software: EasyBuild
Virtual Servers
- Jumphosts: wh-porch
- User Interfaces (UIs): wingedhelix
- Deploy Admin Interfaces (DAIs): wh-dai
- Sys Admin Interfaces (SAIs): wh-sai
-
Compute Nodes: wh-node-a01
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Chaperones: wh-chaperone.umcg.nl
Shared Storage
A Logical File System (LFS) is usually a piece of a larger Physical File System (PFS) that serves a specific need for a specific user group. In case it as a network file system you could call it a share. In addition to LFS-ses for home dirs and the centrally deployed software and reference data the Wingedhelix HPC cluster has access to the following LFS-ses:
- Available prm LFS-ses: prm05, prm06, prm07, prm35, prm36, prm37, prm45, prm46, prm47, prm67
- Available tmp LFS-ses: tmp07
Resources available to Slurm jobs
regular_big_vm partition
| Resource | Amount/value |
|---|---|
| Number of nodes | 1 |
| Cores/node | 61 |
| RAM/node (MB) | 459099 |
| Storage/node (MB) | 900 |
| Node features | tmp07 |
user_interface partition
| Resource | Amount/value |
|---|---|
| Number of nodes | 1 |
| Cores/node | 1 |
| RAM/node (MB) | 1024 |
| Storage/node (MB) | 0 |
| Node features | tmp07 |